PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G18330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 113aa    MW: 12810.8 Da    PI: 10.5129
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G18330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.57.4e-282776251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqv fskRr g++KKA+ELSvLCdaeva+++fs+ g+lye++s
  LPERR08G18330.1 27 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAEVALVVFSPAGRLYEFAS 76
                     8***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-351877IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.3611878IPR002100Transcription factor, MADS-box
CDDcd002652.44E-352088No hitNo description
PRINTSPR004044.8E-292040IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-302095IPR002100Transcription factor, MADS-box
PfamPF003192.4E-272774IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-294055IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-295576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MEMGKVGGGG EGMRKRKTKR GRVEMRRIED RTSRQVRFSK RRSGLFKKAY ELSVLCDAEV  60
ALVVFSPAGR LYEFASSSSS LEKIFGRYWD LLDRTIDLNA GPRGCQVDCN IQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-192090371Myocyte-specific enhancer factor 2B
1tqe_Q9e-192090371Myocyte-specific enhancer factor 2B
1tqe_R9e-192090371Myocyte-specific enhancer factor 2B
1tqe_S9e-192090371Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11217MRKRKT
21219MRKRKTKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660325.12e-54PREDICTED: truncated transcription factor CAULIFLOWER D-like
SwissprotP0C5B22e-29MAD56_ORYSJ; MADS-box transcription factor 56
SwissprotA2Z9Q72e-29MAD56_ORYSI; MADS-box transcription factor 56
TrEMBLA0A0D9XA538e-78A0A0D9XA53_9ORYZ; Uncharacterized protein
STRINGOB08G28340.14e-54(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.11e-27AGAMOUS-like 14